PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077187.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 407aa    MW: 45187.3 Da    PI: 8.5145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-113256226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+++ rtG C++G++C+F+H+
  XP_011077187.1 32 GEPDCSYYIRTGLCRFGATCRFNHP 56
                    6899********************9 PP

2zf-CCCH391.4e-1278102327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_011077187.1  78 QPECQYYLKTGTCKFGATCKFHHPR 102
                     799********************96 PP

3zf-CCCH25.91.7e-08126148527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C ++ r+G Ck+G +CkF+H++
  XP_011077187.1 126 NCAYYIRNGLCKFGRTCKFHHPQ 148
                     7********************97 PP

4zf-CCCH36.96.3e-12269294227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+++tG Ck+G+ CkF+H++
  XP_011077187.1 269 GQPQCQFYMKTGDCKFGAVCKFHHPR 294
                     7899********************96 PP

5zf-CCCH38.22.4e-12314340127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_011077187.1 314 PGEPLCVFYSRYGICKFGPSCKFDHPM 340
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-53057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9863058IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-83256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-43655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15975103IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-675102IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-1078102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-779106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-781105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065121149IPR000571Zinc finger, CCCH-type
SMARTSM003560.027121148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6124151IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5126148IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464267295IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5273295IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234313341IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9315340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5316340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4318338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGPWQKIYDA LLQMNMRPME QMESGPYPVR EGEPDCSYYI RTGLCRFGAT CRFNHPLNRT  60
LAIATARMKS EYPERIGQPE CQYYLKTGTC KFGATCKFHH PRDELGIAGR VALNVLGYPL  120
RPNEINCAYY IRNGLCKFGR TCKFHHPQPS NNMMVPLRDS ALHPPIQSPT TGQLSFHRAH  180
LLPNPQWQTP SSYAPLFMSQ GVASAPGWNT YSGQVEPVSP SENQQGNIQN DGTSYQVEGL  240
NVGSQFGSNT LPIGYYAFKR DNVFPERPGQ PQCQFYMKTG DCKFGAVCKF HHPRERLIPL  300
PDCVLSPIGL PLRPGEPLCV FYSRYGICKF GPSCKFDHPM RVFAHNAAAS ASTDGNAVRD  360
FIAPSPGTLA ISFSPDGLVG AGSTNNQRLS FSESRQKPSG DNNIVTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077187.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A022RI830.0A0A022RI83_ERYGU; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-165zinc finger protein 1